How to Run Windows Applications on Linux Using Bottles: A Step-by-Step Guide

Are you transitioning from Windows to Linux but struggling to replace tools like Notepad++ or WinMerge? Thanks to Wine and Bottles, you can now run Windows-only applications natively on Linux. This guide will show you how to install Windows apps on Linux effortlessly, perfect for .NET developers or anyone needing Windows tools in a Linux environment.

Why Use Bottles

Bottles simplifies running Windows software on Linux by managing Wine configurations automatically. Unlike manual Wine setups, Bottles offers:

  • Pre-configured environments ("bottles")
  • Easy installer integration
  • Desktop shortcuts for Windows apps

Step 1: Install Bottles via Flatpak

Bottles is available as a Flatpak, ensuring compatibility across Linux distributions. Run:

flatpak install flathub com.usebottles.bottles

Step 2: Configure Bottles Permissions

To enable desktop shortcuts and home directory access, run these commands:

# Allow desktop entries  
flatpak override com.usebottles.bottles --user --filesystem=xdg-data/applications  
flatpak override com.usebottles.bottles --user --filesystem=~/.local/share/applications  

# Optional: Access home directory  
flatpak override com.usebottles.bottles --user --filesystem=home

Step 3: Install Windows Applications

  1. Launch Bottles and create a new "bottle".
  2. Download your Windows app’s installer (e.g., Notepad++ or WinMerge).
  3. In Bottles, click Run Executable… and select the installer.
  4. Follow the Windows-style installation prompts.

Step 4: Create Desktop Shortcuts

  1. Go to the Programs list in your bottle.
  2. Click the kebab menu (⋮) next to the app.
  3. Select Add Desktop Entry to launch the app from your Linux desktop.

Conclusion

With Bottles and Wine, running Windows applications on Linux is easier than ever. Whether you’re a .NET developer needing Notepad++ or a power user reliant on WinMerge, this setup bridges the gap between Windows and Linux workflows.